PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_112273g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 180aa MW: 20236.5 Da PI: 7.1882 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196.1 | 1.6e-60 | 10 | 156 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 +++Cyv+C+fC+tilav+vP +sl+++vtvrCGhCt+llsvn+a q l+ + + ++++n+ +++ +++ as+s++ + MA_112273g0010 10 QDHLCYVHCDFCSTILAVNVPCNSLYRIVTVRCGHCTNLLSVNMAPLLQSLPQQAQ--------------QQGQNTGTHDYTRDPASSSTAINDA 90 69******************************************999998887765..............5566666666666776666666442 PP YABBY 102 .senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ne+ +p r Pek+qrvPsaynrfi++eiqrika+nP+i+h+eafsaaaknWah+P+ihfgl MA_112273g0010 91 yPDNEETRIP----SYRQPEKKQRVPSAYNRFIRDEIQRIKANNPKITHKEAFSAAAKNWAHYPHIHFGL 156 1455555554....4899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-67 | 10 | 156 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-7 | 101 | 149 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 103 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MSTSGFEVGQ DHLCYVHCDF CSTILAVNVP CNSLYRIVTV RCGHCTNLLS VNMAPLLQSL 60 PQQAQQQGQN TGTHDYTRDP ASSSTAINDA YPDNEETRIP SYRQPEKKQR VPSAYNRFIR 120 DEIQRIKANN PKITHKEAFS AAAKNWAHYP HIHFGLMLDN RRQSNSEDGG DVLNAEVCNN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF086340 | 0.0 | EF086340.1 Picea sitchensis clone WS02745_E15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247851.1 | 1e-65 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q8GW46 | 7e-59 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A9NY99 | 1e-132 | A9NY99_PICSI; Uncharacterized protein | ||||
STRING | XP_010247851.1 | 4e-65 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-57 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|