PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_110551g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 354aa    MW: 39262.6 Da    PI: 7.3288
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_110551g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55e-20251284134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp+g+k+LCnaCG++yrk +
  MA_110551g0010 251 CVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKAR 284
                     ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.33E-14244285No hitNo description
SMARTSM004011.6E-19245305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.954245281IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-17249284IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-13250282No hitNo description
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
PfamPF003209.0E-18251284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAQTGWENRF CREHDDQRVN CLELALRPAM ETYPFGTGVL NFEGSEGYEA TSEVKMIMGS  60
VHDHGCSPRS SAASLSLDNG LVDHKDDNIY VADHVELEGI RLNSESEKAA AGIDHPADQY  120
DQLKYNYASL ASEDEMIDTW SPHEARKDAA LIINRSGAHF QSSDAEIGEP SPRLDLVENY  180
LSGGGFPVAQ RESSWIRSAS KSRKTLFNNE ENLQERPKLG TSFSSSTKDS TTETPLNHGV  240
GGSRNNVPRV CVDCKTTKTP LWRSGPQGPK SLCNACGIRY RKARRALSAF GNSDHIAAEA  300
CNSTSPKRKL VDNREKRAEK FNVHFKKRSR LSIPSSKRSL MCISRNEADC QSHH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111960.0BT111196.1 Picea glauca clone GQ03234_C11 mRNA sequence.
GenBankEF6784410.0EF678441.1 Picea sitchensis clone WS02921_M09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRB80.0B8LRB8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-16GATA transcription factor 23