PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_109421g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 379aa    MW: 42923.7 Da    PI: 6.0601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_109421g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062230252123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C++ F++   L  H rtH
  MA_109421g0010 230 HECPVCHRNFTSGQALGGHKRTH 252
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.24E-6160184No hitNo description
SMARTSM0035598162182IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-8162183IPR007087Zinc finger, C2H2
SuperFamilySSF576678.24E-6225252No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4228253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14230252IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-11230253IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAATPYVAEE EEGEDTLFQF RSPDMEMEPP HFVSGICSAT KGKRSKRSRH GLPPLPKSEI  60
TARQQYQDQD QDQEQYQEQD QEDEDEQEMA ARCLMMLFAD GSDRHSHSLT TTSSSESLAP  120
STLPPIRRRV KKPKRYDVAD ADSPYGLEWE DGFKQEMMMR LYACKSCNKK FPSFQALGGH  180
RASCQLKDLP RQLVHNQNDE GFKEAASLYR PSVETYKQSL YTEIKKVRMH ECPVCHRNFT  240
SGQALGGHKR THSTPPATST NTSTSLSNIE QQHLSAIRST QELDLNMPAE DENDCIQVQH  300
SSAVSVNLGG DFLDSTNWPP YDYKLISYKS SQPWWMESHQ PGVVKEDEAD SKFRSNTGFV  360
RGRDLGCKRA GLPLITTVN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0531301e-179FJ053130.1 Pinus taeda isolate 4819 anonymous locus 0_13745_01 genomic sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-17C2H2-like zinc finger protein