PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_107950g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 393aa    MW: 42456.1 Da    PI: 9.8387
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_107950g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31322380259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+v+++tYegeH h+
  MA_107950g0010 322 SDEFSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNVLIVTYEGEHSHS 380
                     69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.4E-16271319IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-32309380IPR003657WRKY domain
PROSITE profilePS5081130.251316382IPR003657WRKY domain
SuperFamilySSF1182903.4E-26319380IPR003657WRKY domain
SMARTSM007744.1E-37321381IPR003657WRKY domain
PfamPF031062.6E-26323379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAVEMLDSRN FMERDVHQAA SATLESVQNL IQLLSRHREM QDEGESQCGF AAEIAANRFK  60
RVVSMLGTTT GHARFRKAPT GSSVLSPKIC PSFEAGHANI SASSSSSHEA FRDSEGFISP  120
APLNNNTLYR PTPLHVQAPP QSPVMDSTPQ QHKIPLLPMN SDYSFMGSRP FKEPVISSPP  180
ISSTNSFISS LTASDPCDKT SMLVRSLSSP TAVGRPPLSS SKKACIHGKP ASTNSFISSL  240
TASDPCDKTS MLVRSLSSPT AVGRPPLSSS KKACIHGKPD DLSGKCNTTG GRCHCSSKRK  300
KSRVKRTIRV PAISAKLADI PSDEFSWRKY GQKPIKGSPH PRGYYKCSTV RGCPARKHVE  360
RALDDPNVLI VTYEGEHSHS HSVSENTGLV LDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20309379271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1021090.0BT102109.1 Picea glauca clone GQ0166_J08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AD760.0D5AD76_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-47WRKY DNA-binding protein 11