PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436183g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 521aa    MW: 58207.5 Da    PI: 7.7874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436183g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-07103133236
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapsk 36 
                       r+ h   ErrRR+ +N+ f++ r+ lP ++     
  MA_10436183g0010 103 REIHALSERRRRRGMNQLFSKMRSFLPDQT----A 133
                       778999*********************973....2 PP
2HLH40.54.8e-13342391255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+ h   ErrRR+ +N+ f++L + lP +      K +K++++ ++++YI++Lq
  MA_10436183g0010 342 REIHVLSERRRRNGMNQLFSKLHSFLPDQ----TAKTDKISVVAETINYIHYLQ 391
                       7779999*********************8....69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-499137No hitNo description
SuperFamilySSF474592.36E-6101136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-6103137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4103134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.20E-13338395No hitNo description
SuperFamilySSF474591.06E-14339397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.202340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14340399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDDLSAVVTR CTNLNVSQKL YPYPGLIPRG GCGSVNYIPD VYSQDSIDSD NNERIEAKAA  60
QPMPQFSSNK RRRDVENPED WKNKALKRNR CDVPETSASV SEREIHALSE RRRRRGMNQL  120
FSKMRSFLPD QTAKTNKDEH DSQPAFPITL AAPLDCSETH TPKMHFLLGA TNSEIPPLGI  180
GTRRQAADYS MSIQHPMAMN HPSSSLQFFN QSGHGGSEVQ TLINFPPPEV AQMDDLSAVV  240
TKCTNLNVFE KLYAYPGLIP RSGCGSVNSI PDVYSLVSID SDNNERAHCM DRKFAAKAAQ  300
PMQQFPSNKR RRDVENAEDW KYKALKRNRC NGPETSSSVS EREIHVLSER RRRNGMNQLF  360
SKLHSFLPDQ TAKTDKISVV AETINYIHYL QQRLRTRSNK RAGGADTAAS SESHETDTIL  420
SNTDSSDYAI LPEISVKSHA GKDHFITIKC AKKGNLLPSI ILVAEGQNLE VMDAFVSTND  480
TVAFHCLHLK ALHTLDAAGR EAFMDTLNML IKSELQISLE P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341352REIHVLSERRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1235620.0BT123562.1 Picea sitchensis clone WS04714_L19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABF70.0D5ABF7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-10ABA-inducible BHLH-type transcription factor