PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435790g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 560aa    MW: 62820.1 Da    PI: 7.6344
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435790g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.71e-1101895572373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + Ll+cA+ v++ + e+a + +a l+ +as++gdp+qR++++f+ ALa+rl++  +    ++++s++ +k+ +  + a+k++++++P+ kf+
  MA_10435790g0010 189 LHSLLDCAKIVDT-EPERAGQSVAYLQSIASQHGDPTQRIVFHFADALAKRLSKGIE-QKPQFQSSDECSKSFEGLTLAYKALNDACPYSKFA 279
                       689******9988.7899***********************************9333.333445555555667888999************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +lt NqaIlea++++e++Hi+Df+i qG+QW+aLl+a+a+Rp+g+p +++iTg+ +p+ g   + +l +tg+rL++fA+ l+++fef + v+k
  MA_10435790g0010 280 QLTGNQAILEAMDKAEKIHIVDFGIVQGVQWAALLHAFATRPGGKPqKIKITGIPAPTLGqnPTSSLLATGKRLTEFAKLLDLEFEFCP-VSK 371
                       ******************************************777769*********999888999***********************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276
                       +++++el++L+++++E++aVn++lql++ll   ++++++  ++Lkl   lsPkvv++ e ea +n+  F  rf +al+y+sa+fds+  ++++
  MA_10435790g0010 372 HMSEVELSTLKIEQDECIAVNFMLQLYNLL---GDSPEPLVKILKLAHALSPKVVTLGEYEAYLNACHFQVRFRNALDYFSAFFDSMePTNMS 461
                       ******************************...666666678*********************************************778999 PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       r+  er +vE+ +++++i+ +va egaer+ r e   +Wr  +e+aGFk  +ls++a +qa+ ll ++  +gy+++e+sg l l W++rpL++
  MA_10435790g0010 462 RDCAERLNVEKLFFAEKIMGIVAFEGAERKTRLEGRDQWRILMESAGFKFTNLSHYAKSQARILLYNYC-EGYSLQESSGFLSLAWQTRPLLT 553
                       999****************************************************************99.9********************** PP

              GRAS 370 vSaW 373
                       vSaW
  MA_10435790g0010 554 VSAW 557
                       **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.547162539IPR005202Transcription factor GRAS
PfamPF035143.6E-108189557IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAMIKQPIKP SNPLQFPLYS TVRQNLPLKS FLSTSISSAT KAFGRLTCKC NAFCFEMSKD  60
VGALVREFDP AIPLDKAVTP PSSWYTNSAF LPLEMERVFY RGWQAVEQYS GAAGGGHDFQ  120
TLHHRMPNVH QSVCPPMQPL IREPSTPPQK RQQGQQQQDP LKGKREEDPP KPEIDALDRH  180
MQGQRSDLLH SLLDCAKIVD TEPERAGQSV AYLQSIASQH GDPTQRIVFH FADALAKRLS  240
KGIEQKPQFQ SSDECSKSFE GLTLAYKALN DACPYSKFAQ LTGNQAILEA MDKAEKIHIV  300
DFGIVQGVQW AALLHAFATR PGGKPQKIKI TGIPAPTLGQ NPTSSLLATG KRLTEFAKLL  360
DLEFEFCPVS KHMSEVELST LKIEQDECIA VNFMLQLYNL LGDSPEPLVK ILKLAHALSP  420
KVVTLGEYEA YLNACHFQVR FRNALDYFSA FFDSMEPTNM SRDCAERLNV EKLFFAEKIM  480
GIVAFEGAER KTRLEGRDQW RILMESAGFK FTNLSHYAKS QARILLYNYC EGYSLQESSG  540
FLSLAWQTRP LLTVSAWCCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1281885574374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027930.0BT102793.1 Picea glauca clone GQ02016_B05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614707.11e-139PREDICTED: scarecrow-like protein 4
RefseqXP_017614714.11e-139PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I01e-133SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0B4U7620.0A0A0B4U762_PINRA; SCL2 (Fragment)
TrEMBLA0A2U7MTK50.0A0A2U7MTK5_PINRA; PIN2 protein
STRINGGorai.003G015400.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-126GRAS family protein