PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10435654g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 331aa MW: 37805.6 Da PI: 4.4849

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10435654g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.8	1.3e-33	6	107	28	128
NAM 28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgekt 119 l+ +++i+ +d+y+++PwdL + + +e+e++fF++rd++ ++ r+nr+t+sgyWkatg+d++v++ + + +glkktLvfy+grap+g+kt MA_10435654g0010 6 LHNFNFIPVLDLYRYDPWDLSSFSSLGEREMFFFVPRDERCQNnRGRPNRMTASGYWKATGSDRSVHDDNAKCIGLKKTLVFYRGRAPRGQKT 98 455588************966666999*****99986377******************999****************** PP NAM 120 dWvmheyrl 128 dW+m+eyrl MA_10435654g0010 99 DWFMNEYRL 107 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.654	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-39	8	126	IPR003441	NAC domain
Pfam	PF02365	2.5E-13	22	107	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MVQGRLHNFN FIPVLDLYRY DPWDLSSFSS LGEREMFFFV PRDERCQNNR GRPNRMTASG 60 YWKATGSDRS VHDDNAKCIG LKKTLVFYRG RAPRGQKTDW FMNEYRLPDY SDMPKKEVVL 120 CRIYKKATPL KWLEQQAMNQ AEVTSTYEDL DCISQDSLPS PAKINDNKRV QEAKSICVRD 180 SXXXNDNKRV QEAKSICVRD SDYVACDEFT TEPSSSPRDN VTKSDITCCL GCAIDSDLME 240 STVYGGSIDP DFPVFVDDCE RNEEFSSLMT MLNSSSSSSS VECCCWEPLL IPEMAEEPSL 300 VQITKPSMDF RNEEAGSDGN WIYMDIISFS P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	8	128	45	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	8	128	48	170	NAC domain-containing protein 19
3swm_B	2e-31	8	128	48	170	NAC domain-containing protein 19
3swm_C	2e-31	8	128	48	170	NAC domain-containing protein 19
3swm_D	2e-31	8	128	48	170	NAC domain-containing protein 19
3swp_A	2e-31	8	128	48	170	NAC domain-containing protein 19
3swp_B	2e-31	8	128	48	170	NAC domain-containing protein 19
3swp_C	2e-31	8	128	48	170	NAC domain-containing protein 19
3swp_D	2e-31	8	128	48	170	NAC domain-containing protein 19
4dul_A	2e-31	8	128	45	167	NAC domain-containing protein 19
4dul_B	2e-31	8	128	45	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085463	0.0	EF085463.1 Picea sitchensis clone WS0271_F01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NVV7	0.0	A9NVV7_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-52	NAC domain containing protein 36