PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10434782g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25680 Da PI: 6.1486 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 149.2 | 1e-46 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA+ar+rdPvyG+vgvi+ lq+ql+ql+a+ MA_10434782g0020 48 PCAACKFLRRKCTPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADARLRDPVYGCVGVISILQHQLKQLQAD 140 7******************************************************************************************** PP DUF260 94 lallkee 100 l+ +++e MA_10434782g0020 141 LSNARSE 147 **99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.805 | 47 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-46 | 48 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MIDSFSRFKD YERFLSPLDE RFDWTGIEPD IFNYIFSCDI MASSSNSPCA ACKFLRRKCT 60 PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ REDAVNSLAY EADARLRDPV 120 YGCVGVISIL QHQLKQLQAD LSNARSELSK YINAGITGPL LGGPASNLGI GMGLPGTSRE 180 HIFREQMMEL CSDEHFCSLG PLNPFTQSSR SSSSHDRNSA RGIDPQINLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-57 | 45 | 158 | 8 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-57 | 45 | 158 | 8 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117321 | 0.0 | BT117321.1 Picea glauca clone GQ03817_C06 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266137.1 | 4e-73 | PREDICTED: LOB domain-containing protein 6 | ||||
TrEMBL | A0A443NSI2 | 1e-73 | A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein | ||||
STRING | VIT_00s0340g00090.t01 | 1e-72 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 8e-64 | LBD family protein |