PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_10434213g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14244 Da PI: 4.0152 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66.3 | 7.3e-21 | 8 | 82 | 25 | 99 |
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++ +kfa++h++FGa nv+kl+++lp ++ +a++s+vyeA ar++dP G++g+il+lq q++ l++++ ++++ MA_10434213g0010 8 NDLHKFAILHQVFGACNVIKLIQELPSDQGLEAINSMVYEASARLEDPAFGCTGIILQLQLQISDLESQITSTQT 82 6689****************************************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.801 | 1 | 84 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS51257 | 5 | 1 | 23 | No hit | No description |
Pfam | PF03195 | 4.5E-20 | 8 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 129 aa Download sequence Send to blast |
MLYRSTSNDL HKFAILHQVF GACNVIKLIQ ELPSDQGLEA INSMVYEASA RLEDPAFGCT 60 GIILQLQLQI SDLESQITST QTVIQKIRSQ QAQLLASIPG FNDKFNPAIS TVNDADEEDE 120 DLSNSNLMD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-18 | 12 | 82 | 39 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-18 | 12 | 82 | 39 | 109 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT116525 | 0.0 | BT116525.1 Picea glauca clone GQ03801_F09 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022743269.1 | 1e-27 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 1e-25 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A9P1U3 | 8e-56 | A9P1U3_PICSI; Uncharacterized protein | ||||
STRING | Pavir.J04684.1.p | 9e-27 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28500.1 | 6e-20 | LOB domain-containing protein 11 |