PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10433112g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 596aa MW: 63522.7 Da PI: 6.1179

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10433112g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.8	9e-27	211	264	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + ++ tp+LH++Fvea+++LGG++ tPk +l++m+v+gLt++hvkSHLQkYRl MA_10433112g0010 211 QWMCSTPDLHDQFVEAISHLGGADGVTPKGVLKVMGVQGLTIYHVKSHLQKYRL 264 56888************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-24	209	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-12	210	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-20	211	265	IPR006447	Myb domain, plants
Pfam	PF14379	1.1E-22	296	341	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MSSGGGPPPE SLDASGLPVL DGGGSTSVSA GCRPFQVSLM DSNERSMRAS LGDGGGGGGG 60 VGGACDDAPL PQLPQVLTIL CAAGSFLGYD VWLDAWSYVA QLDGFGGSIQ IQNTAGSQAR 120 SIPDHQYGAP LDQPLTTWPI TPLTNSVSVR YSSLILSASA SIMFQNKKFS TAGLVPQIFH 180 GSKQRGAGPL GVTSSSSGSP VTSGGSGSTK QWMCSTPDLH DQFVEAISHL GGADGVTPKG 240 VLKVMGVQGL TIYHVKSHLQ KYRLAKYIPE SLEGGKSDKE KGNKIVSNLE VTSGTQIAEA 300 LQMQMEVQKR MHEQLEVQRQ LQLRIEAQGR YLQKIIEEQQ KISTAKPETS SSPETSPPRY 360 GEPCEITAKA FPDSESPGKT GRHRQDGNAV MPPADIAQND QSAGIAYPRD EPQLQTSSYA 420 YRVSDGMPCS DNLEFGSPSK RSRLNNDTGQ PKQENLSSQP HDQQQTLPMS YSSQTSHLKV 480 EELPGSIYQN RVAGLVGQIE STRPSQSTAD LHAQQLPAKL PINNLDHISH AQDFYRPLCA 540 KNASDSIRFI SPGSQIQVPA SNLPAPSQDQ FSSALDGHDG CHNVSSSQVS LFEPWP

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MSSGGGPPPE SLDASGLPVL DGGGSTSVSA GCRPFQVSLM DSNERSMRAS LGDGGGGGGG  60
VGGACDDAPL PQLPQVLTIL CAAGSFLGYD VWLDAWSYVA QLDGFGGSIQ IQNTAGSQAR  120
SIPDHQYGAP LDQPLTTWPI TPLTNSVSVR YSSLILSASA SIMFQNKKFS TAGLVPQIFH  180
GSKQRGAGPL GVTSSSSGSP VTSGGSGSTK QWMCSTPDLH DQFVEAISHL GGADGVTPKG  240
VLKVMGVQGL TIYHVKSHLQ KYRLAKYIPE SLEGGKSDKE KGNKIVSNLE VTSGTQIAEA  300
LQMQMEVQKR MHEQLEVQRQ LQLRIEAQGR YLQKIIEEQQ KISTAKPETS SSPETSPPRY  360
GEPCEITAKA FPDSESPGKT GRHRQDGNAV MPPADIAQND QSAGIAYPRD EPQLQTSSYA  420
YRVSDGMPCS DNLEFGSPSK RSRLNNDTGQ PKQENLSSQP HDQQQTLPMS YSSQTSHLKV  480
EELPGSIYQN RVAGLVGQIE STRPSQSTAD LHAQQLPAKL PINNLDHISH AQDFYRPLCA  540
KNASDSIRFI SPGSQIQVPA SNLPAPSQDQ FSSALDGHDG CHNVSSSQVS LFEPWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-20	210	267	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	210	267	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	210	267	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	210	267	1	58	Protein PHOSPHATE STARVATION RESPONSE 1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT108056	0.0	BT108056.1 Picea glauca clone GQ03116_F08 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-47	G2-like family protein