PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10432332g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 23194.2 Da PI: 7.7693 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 192 | 2.9e-59 | 34 | 181 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl.ksnvekeesastsv 96 s++eq+Cyv+CnfC+tilavsvPs+slf++vtvrCGhC +llsvn++ as l a + ++++ +++ + s +++e++a MA_10432332g0010 34 SAAEQLCYVHCNFCSTILAVSVPSSSLFNIVTVRCGHCNHLLSVNMMGASPPLEAGQ---------IQNDYSKDSASSsASPTISERTA---- 113 679******************************************999887776665.........23332222222101222222222.... PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e+ ++ PPekrqrvPs ynrfikeeiqrika+nPdi h+eafsaaaknWahfP+ihfgl MA_10432332g0010 114 -----NSYAGNEAVKMFS-SIPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGL 181 .....2223344455555.67***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-65 | 35 | 181 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.58E-7 | 125 | 174 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.9E-4 | 130 | 173 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSASPDCSNI DSASIHSGSV ITEGAAMSGC IESSAAEQLC YVHCNFCSTI LAVSVPSSSL 60 FNIVTVRCGH CNHLLSVNMM GASPPLEAGQ IQNDYSKDSA SSSASPTISE RTANSYAGNE 120 AVKMFSSIPP EKRQRVPSVY NRFIKEEIQR IKAKNPDIRH KEAFSAAAKN WAHFPHIHFG 180 LMLENNKQAA IDKGNLREGT QIGTVKDGRM TTNLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124509 | 0.0 | BT124509.1 Picea sitchensis clone WS0474_K18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424060.2 | 1e-66 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q8GW46 | 3e-61 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D5ADY5 | 1e-125 | D5ADY5_PICSI; Uncharacterized protein | ||||
STRING | XP_006487832.1 | 1e-65 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-62 | YABBY family protein |
Publications ? help Back to Top | |||
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