PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10432141g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | AP2 | ||||||||
Protein Properties | Length: 359aa MW: 40245.8 Da PI: 9.2433 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 46 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+Wv+eIr p+ + +r++lg++ tae Aa+a++aa ++l+g MA_10432141g0020 46 QYRGVRMRS-WGSWVSEIRAPRH---HekTRIWLGSYSTAEAAARAYDAALLCLRG 97 69****998.**********954...135*************************98 PP | |||||||
2 | AP2 | 54.1 | 3.8e-17 | 160 | 211 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+Wv+eIr p+ + +r++lg++ tae Aa+a++aa ++l+g MA_10432141g0020 160 QYRGVRMRS-WGSWVSEIRAPRH---HekTRIWLGSYSTAEAAARAYDAALLCLRG 211 69****998.**********954...135*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-29 | 45 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 46 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-33 | 46 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 46 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.10E-16 | 46 | 107 | No hit | No description |
Pfam | PF00847 | 2.4E-10 | 46 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-29 | 159 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-16 | 160 | 221 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-19 | 160 | 220 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-33 | 160 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 160 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 160 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MVCRSKQSEC HQNVLNGSQQ HSERRECQVS SKARKKSNRG SERPRQYRGV RMRSWGSWVS 60 EIRAPRHHEK TRIWLGSYST AEAAARAYDA ALLCLRGSSA VFNFPNSSTI IHPHQSFQPL 120 LMSPKSIQTQ WFAEHSERRE CQVSSKARKK SNRGSERPRQ YRGVRMRSWG SWVSEIRAPR 180 HHEKTRIWLG SYSTAEAAAR AYDAALLCLR GSSAVFNFPN SSTIIHPHQS FQPLLMSPKS 240 IQKVAAAAAY ASPSAAADLS GSNGVDCAAQ SLQVSLDSDV KTAVGTETKP NSANSNDDVP 300 VTEEISWLES PSRFNNYTYD HQMLCCALQS SDPSPLSNWV DESYGQDYHE DLCNLWTFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 46 | 224 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B2CSN5 | 9e-38 | B2CSN5_TAXCU; Transcription factor AP2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-23 | ERF family protein |