PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431317g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 310aa    MW: 35125.6 Da    PI: 6.8348
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431317g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-137861499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + l +p ++ e++++k  + ++ +le +sg  W v +   +++ + ++++GW+ Fv+++ ++ + ++vF++++++ f  +v++f++
  MA_10431317g0010  7 SSLEIPSECSEHIQIK--GRRDAILEGPSGYLWHVMI--YGSGTSAFFKDGWEIFVSDHLIQPNNIIVFRHVNDMHF--LVQIFES 86
                      4588999988777766..5569***************..999999*************************9999999..***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.646187IPR003340B3 DNA binding domain
SMARTSM010190.0045587IPR003340B3 DNA binding domain
CDDcd100172.18E-13584No hitNo description
Gene3DG3DSA:2.40.330.101.0E-15687IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-10786IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-16787IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGAEFSSSLE IPSECSEHIQ IKGRRDAILE GPSGYLWHVM IYGSGTSAFF KDGWEIFVSD  60
HLIQPNNIIV FRHVNDMHFL VQIFESTGYE KQSTFTIKNY ESCHLNKRGI STICNHNSYI  120
DKKNFTEESI FEQEKPKGNP LKYAIGDVEN TKKRFIQGTG LKVHITETCV ETSVTNRRSF  180
SPKNHEFLDH CKISVKHASR LQNSKWNFTE NQVGSCAKQP IILDSEDEFD SQAPPAYSHD  240
QDTIVSCHSG SEVFQEKLSS LGDISPDMQV EDLKASNSVK RNKPKFSLVM KKTAVSAPFW  300
LVSFTPFSLP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1256825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-06B3 family protein