PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10430340g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 660aa MW: 73635.8 Da PI: 4.5484 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.8 | 1e-53 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeelv++yLk+kv+g+++++ ++i+e+d+yk+eP+dLp k ++++++ ewyfF ++d+ky++g+r+nr+tk+gyWk+tgkd++ MA_10430340g0010 6 LQPGFRFHPTDEELVSYYLKRKVRGQRFDF-NAISEIDLYKFEPRDLPgKsCLQSRDLEWYFFNPKDRKYPNGSRTNRSTKDGYWKTTGKDRP 97 579**************************9.89***************6347778888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 v+s +++vg+kktLv+++grap+ge+t+Wvmheyrle MA_10430340g0010 98 VCS-ASQTVGMKKTLVYHTGRAPRGERTNWVMHEYRLE 134 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-62 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.864 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-29 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MDQVSLQPGF RFHPTDEELV SYYLKRKVRG QRFDFNAISE IDLYKFEPRD LPGKSCLQSR 60 DLEWYFFNPK DRKYPNGSRT NRSTKDGYWK TTGKDRPVCS ASQTVGMKKT LVYHTGRAPR 120 GERTNWVMHE YRLEGKDLKM SNPAQDSYVL CRVFQKSGPG PKNGEQYGAP FREEDWNADI 180 FSKAEEISSV EMDHVATNDS TLSKTEEIIA HCGGVPALDN VIVSPVEELA PSIYDYDIDS 240 ILNTWIDNPD DIEPNAKENE LVQGNQEWDA LISKETLEQT VMQTEDGEVF NDLGDLFGNI 300 NNPVQRNTED YVDIFHVQDS MRVGEKGSTS IDPFLSNLHE SSPAFLDGSF LELKDLVNPV 360 ELNTSDLETF DRKDTFFDVS DCPDNFAAPS TALHPKESQN QHTDLSFLRG KQEMSTGVSE 420 QTQIPYGYSV LQEPYNVERH LYSSPVGENS GASYWMQEQW MNNGFAFSEI DDARNLAPSA 480 DDEFMMTRQD VSAGMQSSKN HEDYDTGSSS KFASLLASIH ARPASAAEYP FRSKYLSQLP 540 KVDSVTVETA INHVAAVSVT CACSMVLEPK IEHSSGDLLS TCSCGVANGI VQGSFVSSWP 600 ASSSIGFKSA DSVTPRKTSS GLHAGFLFVF FLGAISVFVW ALVVGGTFIL GKYIYKLVIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-54 | 3 | 156 | 12 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF678266 | 0.0 | EF678266.1 Picea sitchensis clone WS02911_G22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQV4 | 0.0 | B8LQV4_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 3e-84 | NAC domain containing protein 2 |