 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MA_103421g0030 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
| Family |
GATA |
| Protein Properties |
Length: 359aa MW: 39665.3 Da PI: 9.148 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MA_103421g0030 | genome | ConGenIE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 56.9 | 2.8e-18 | 259 | 293 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
MA_103421g0030 259 CSHCLVQKTPQWRAGPLGPKTLCNACGVRFKSGRL 293
*******************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MLRIVLSNSV SKQNNSLPST LIPHGLFFNS ASLPVPPLLN TPPPSSHSYP RVTSNQSKPT 60
RKEVRRSKPG RRDSVSARSH LNDEENSSDY TEVSARSVVR NSSSSVTEVT EELPTAELCV 120
PMDTLADLEW LSTFVEDSFM PELPPGCGPA SELVPSTDGN KTDSGDNKET KPQSYKISYI 180
SPCNWIPVKA RSKRSRTGCR VWSFNNPLLP ANPGFESDGV VFTQSSDSSC SDSSQPRPAK 240
KYKKSHSKKA QDGSQPRRCS HCLVQKTPQW RAGPLGPKTL CNACGVRFKS GRLVPEYRPA 300
ISPTFLTEVH SNSHRKILEM RRQKEEEEQR SDITSQTCSN GGNESFFGNS LPSQEPIRV
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT993895 | 3e-77 | KT993895.1 Pinus koraiensis isolate 2S12_2_1 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993927 | 3e-77 | KT993927.1 Pinus koraiensis isolate 2S8_11_1 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993928 | 3e-77 | KT993928.1 Pinus koraiensis isolate 2S8_11_2 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993966 | 3e-77 | KT993966.1 Pinus koraiensis isolate 4I24_14_2 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993978 | 3e-77 | KT993978.1 Pinus koraiensis isolate 4I24_7_2 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993984 | 3e-77 | KT993984.1 Pinus koraiensis isolate 4I4_11_2 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993987 | 3e-77 | KT993987.1 Pinus koraiensis isolate 5N15_14_1 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993988 | 3e-77 | KT993988.1 Pinus koraiensis isolate 5N15_14_2 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| GenBank | KT993993 | 3e-77 | KT993993.1 Pinus koraiensis isolate 5N17_32_1 GATA binding protein 1 (gatabp1) gene, intron and partial cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP68 | 17 | 287 |
