PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_10190951g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 17314.9 Da PI: 11.1077 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 8e-14 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +l++++ + G g+W a+ g++Rt+k+c++rw +yl MA_10190951g0010 28 KGPWTVQEDMQLIRYISLQGEGRWPYLAKAAGLKRTGKSCRLRWINYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + T+eE+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ MA_10190951g0010 81 RSKITPEEERLIIKLHGRWGNR-WSRIAQNLP-GRTDNEIKNYWRT 124 6788******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.055 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-11 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-7 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 25.45 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 82 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 83 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-10 | 85 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
MLWSANFMAL RNWWEFSAVE HEQPQTRKGP WTVQEDMQLI RYISLQGEGR WPYLAKAAGL 60 KRTGKSCRLR WINYLRPDLK RSKITPEEER LIIKLHGRWG NRWSRIAQNL PGRTDNEIKN 120 YWRTRIKKRL NLQAETGSSG MDAGSM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 24 | 130 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483815.1 | 9e-56 | PREDICTED: myb-related protein 305-like | ||||
Refseq | XP_016672801.1 | 9e-56 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 3e-54 | MYB05_ANTMA; Myb-related protein 305 | ||||
Swissprot | Q2QZJ8 | 2e-53 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A222UAN3 | 6e-59 | A0A222UAN3_GINBI; R2R3MYB29 | ||||
STRING | Gorai.006G030800.1 | 3e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-54 | myb domain protein 21 |