PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_101790g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27574 Da PI: 8.4969 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv ++++G g W++ ++ g+ R++k+c++rw +yl MA_101790g0010 14 KGTWTKEEDHRLVTHIRLHGEGGWRSLPKAAGLLRCGKSCRLRWINYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ G++ W++Ia +++ gRt++++k++w+++ MA_101790g0010 67 RGSFTEEEDELIIKLHSVVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.652 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.31E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.697 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRSSCYEKA RTNKGTWTKE EDHRLVTHIR LHGEGGWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGSF TEEEDELIIK LHSVVGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSKG 120 IDPQSHHPLG QPYNSNNIAV SRSLPDNEIP ALQNPRTPEI TDFFRHDRSE SSPIEPEALD 180 AEEHAELNLN LCMSLPSTSA PAANSPSSVD RTAVLNPTSG RGRLTAEMRE SMDNSVFVSS 240 PNWCN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF085595 | 0.0 | EF085595.1 Picea sitchensis clone WS0285_N09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462415.1 | 6e-83 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9SZP1 | 2e-79 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NW87 | 1e-159 | A9NW87_PICSI; Uncharacterized protein | ||||
STRING | Gorai.013G139200.1 | 2e-82 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-79 | myb domain protein 4 |