PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10157944g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24451.5 Da PI: 8.8064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl MA_10157944g0010 15 KGAWTKEEDKRLIAYIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ MA_10157944g0010 68 RGNFSEEEDDLIIKLHSLLGNK-WSLIAGRLP-GRTDNDIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.708 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-30 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.46 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-17 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-28 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRSPCCEKA HTNSKGAWTK EEDKRLIAYI EAHGEGSWRS LPKAAGLLRC GKSCRLRWIN 60 YLRPDVKRGN FSEEEDDLII KLHSLLGNKW SLIAGRLPGR TDNDIKNYWN THIKKKLLSK 120 GFDTQNHRPL GQPYNRCNNT SLSRPAADNE IPAFQNLRTP EIADFFQYDR PESSTIETAA 180 SKAQERPDLN LDLCMSLPFH SAPAEIRAST DDRNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 15 | 117 | 7 | 108 | B-MYB |
1h8a_C | 1e-28 | 14 | 117 | 26 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826645.1 | 1e-91 | myb-related protein 308 | ||||
Swissprot | P20026 | 8e-84 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A9NYS6 | 1e-122 | A9NYS6_PICSI; Uncharacterized protein | ||||
STRING | ERM93882 | 5e-91 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-85 | myb domain protein 4 |