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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_10118834g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 127aa MW: 14324 Da PI: 6.8041 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
W++Ia +++ gRt++++k++w+++l
MA_10118834g0010 1 WSLIAGRLP-GRTDNEIKNYWNSHL 24
*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 3.34E-7 | 1 | 30 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 7.13E-7 | 1 | 24 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-12 | 1 | 25 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 17.29 | 1 | 28 | IPR017930 | Myb domain |
| Pfam | PF00249 | 2.1E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 127 aa Download sequence Send to blast |
WSLIAGRLPG RTDNEIKNYW NSHLKRKLMS MGVDPLIHRP FQKNSRLLPS PPGTVREPQT 60 ARSHDVLQDF FRYPSELSAE SEQISDATSG LAQDEHLELN VHLNLNLELS ISRSSIHAAA 120 KEDVVNS |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT118843 | 1e-179 | BT118843.1 Picea glauca clone GQ04010_O20 mRNA sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021292755.1 | 2e-24 | transcription factor MYB8-like | ||||
| TrEMBL | A9NTK0 | 2e-54 | A9NTK0_PICSI; Uncharacterized protein | ||||
| STRING | POPTR_0010s12420.1 | 2e-22 | (Populus trichocarpa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38620.1 | 8e-22 | myb domain protein 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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