PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28341A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 68aa MW: 7272.52 Da PI: 11.3909 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++g Oropetium_20150105_28341A 9 KRIENKINRQVTFSKRRNGLLKKANEISVLCDAEVAVIVFSPKG 52 79****************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.749 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.09E-33 | 2 | 57 | No hit | No description |
PRINTS | PR00404 | 2.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KANEISVLCD AEVAVIVFSP KGSSTSTPPT 60 SGRVVCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 49 | 1 | 49 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28341A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY198327 | 5e-69 | AY198327.1 Lolium perenne MADS2 mRNA, complete cds. | |||
GenBank | HQ588324 | 5e-69 | HQ588324.1 Brachypodium distachyon MADS-box (AP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105333.2 | 4e-26 | zea apetala homolog 1 | ||||
Refseq | XP_007156376.1 | 6e-27 | hypothetical protein PHAVU_003G2810000g, partial | ||||
Refseq | XP_019438988.1 | 1e-26 | PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Refseq | XP_020149442.1 | 4e-26 | MADS-box transcription factor 15-like | ||||
Refseq | XP_020234510.1 | 1e-26 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_027333787.1 | 1e-26 | truncated transcription factor CAULIFLOWER D isoform X2 | ||||
Refseq | XP_028095641.1 | 1e-26 | agamous-like MADS-box protein AGL8 | ||||
Swissprot | Q6Q9I2 | 6e-27 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | A0A453BPV8 | 3e-29 | A0A453BPV8_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.Ba03990.1.p | 1e-29 | (Panicum virgatum) | ||||
STRING | Pavir.Bb00065.1.p | 7e-30 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-26 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28341A |