PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28323A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 255aa    MW: 28109.2 Da    PI: 6.6029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28323AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.75.5e-095372221
                               --SS-EEEEEEE--TT-SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefp 21
                               +Dgy+WrKYGqK++++s +p
  Oropetium_20150105_28323A 53 HDGYEWRKYGQKMIRSSLYP 72
                               7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-1338120IPR003657WRKY domain
SuperFamilySSF1182902.75E-1046120IPR003657WRKY domain
SMARTSM007741.4E-1152122IPR003657WRKY domain
PROSITE profilePS5081111.37154118IPR003657WRKY domain
PfamPF031069.7E-1254120IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAKRDDSVTS SSSCSNGTHK RLLQDSSGYV QDQATNRKVH VSTRTEYTYA PYHDGYEWRK  60
YGQKMIRSSL YPSTVPCSPW EARKVHVPSG AWLPATKHVE QTNSQDPPLF RVVYTNEHAC  120
ISTDASSIHI QQMADASLRK AQAELVPSSL MTRRSAGHGE VIKEEEGAII VSSLLDVING  180
GRRDVATTSV GRYSVLSSSS TTVGRSSREE ASPSVSSVLL PASDKPEMDF VEPLESHWFE  240
PLDLGWFIES TRTD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28323A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814595.12e-89probable WRKY transcription factor 67
TrEMBLA0A2T7DF929e-89A0A2T7DF92_9POAL; Uncharacterized protein
STRINGPavir.Eb03559.1.p3e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.11e-07ABA overly sensitive mutant 3