PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28195A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 26669.8 Da PI: 8.7066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 151 | 170 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ CgksF++ L H Oropetium_20150105_28195A 151 HECHVCGKSFPTGQALGGHK 170 79*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.6E-13 | 89 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.58E-8 | 90 | 112 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.58E-8 | 146 | 173 | No hit | No description |
Pfam | PF13912 | 2.2E-13 | 150 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.18 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.074 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAVEALLDAA AVVPPPPSSS SSPATSDEAS EPPSSISTAA GKRRRSRPSS RLQHQGRRRE 60 PVTEEEHLAL CLVMLARGRR DLFHDDDLVH ACSVCGKAFA SYQALGGHKA SHRKPAPAXX 120 XXXXXXXXXP QVIMTTTPTA TAPTTTTTPA HECHVCGKSF PTGQALGGHK RCHYDGTIGS 180 AAAPARXXXX XXXXXXXQGG RASRTAPNTV GLIDLNLPAL PAAERYCTAA EDEEVLSPMA 240 AFKKPRLMIP A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28195A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955742 | 1e-38 | EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808181.1 | 2e-56 | zinc finger protein 1-like | ||||
TrEMBL | A0A3L6R699 | 5e-56 | A0A3L6R699_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J06981.1.p | 2e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 3e-34 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28195A |