PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28139A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family VOZ
Protein Properties Length: 370aa    MW: 39951.1 Da    PI: 4.4732
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28139AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ153.21.6e-47277370193
                        VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 
                                p+ps++lgpkcalwdc+rp++gse+++dyc+ +ha+laln+ gl+g++pv+rp+g+dlkdg++f al akvqgk+vgip+c+ga
  Oropetium_20150105_28139A 277 PSPSQYLGPKCALWDCSRPVRGSEECRDYCNPYHADLALNDdGLLGVRPVVRPRGVDLKDGPFFTALIAKVQGKNVGIPVCKGA 360
                                89**************************************9799**************************************** PP

                        VOZ  84 atakspwnaa 93 
                                at+kspwna+
  Oropetium_20150105_28139A 361 ATSKSPWNAP 370
                                ********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAGDPAAGAG TDLPASAGKG SRSSTRHRQF RDRAKTRVDD LQEMFSGLQS ARKESRSADA  60
AVLEEQVHQM LREWRAELSV ASPASSLQAL AFGAPQHSQG NNTGAPDLPS ETLRLLQLAV  120
AEEEDDATSK LADPGPPMPV PDAHQNHNLY EHQHGQVAWM PNPEQQGEGT QQLLEHGAQG  180
GCGEVAAANA FNDQMYYIDH ELSIDDFLCD GDGYKINIPE SNPDDLSNLQ GIGQMEDQFN  240
FPVELPSHSS YADVNNAVQD TGDVFVHMSD LLTTIDPSPS QYLGPKCALW DCSRPVRGSE  300
ECRDYCNPYH ADLALNDDGL LGVRPVVRPR GVDLKDGPFF TALIAKVQGK NVGIPVCKGA  360
ATSKSPWNAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28139A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961501.10.0transcription factor VOZ1
TrEMBLK3Z4V00.0K3Z4V0_SETIT; Uncharacterized protein
STRINGSi021568m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-27vascular plant one zinc finger protein