PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_28042A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 83aa MW: 9356.16 Da PI: 11.3381 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.3e-29 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++g+ Oropetium_20150105_28042A 9 KRIENKINRQVTFSKRRNGLLKKANEISVLCDAEVAVIVFSPKGE 53 79*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.777 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-27 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.88E-32 | 2 | 52 | No hit | No description |
PRINTS | PR00404 | 4.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-25 | 10 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KANEISVLCD AEVAVIVFSP KGEALRVRHR 60 PAVRPFQFLL SSICFVSFIH CC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 50 | 1 | 50 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_28042A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ588324 | 4e-67 | HQ588324.1 Brachypodium distachyon MADS-box (AP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193748.1 | 5e-28 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Swissprot | Q6Q9I2 | 4e-27 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | A0A453BPV8 | 2e-28 | A0A453BPV8_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.Bb00065.1.p | 1e-29 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 7e-28 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_28042A |