PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_27990A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 32267.3 Da PI: 8.0259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.4 | 3.4e-20 | 22 | 138 | 17 | 128 |
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 yL++kv+gk+l++ e+ike+diyk++PwdLp+ +++ + + + ++ ++ ++++ +++ + + + +++s+ Oropetium_20150105_27990A 22 SYLRRKVAGKRLSI-EIIKEFDIYKHDPWDLPSegQHDFHGQGMVLLLPAGEEIPEQHPAQQGHRLRLLEGHRHRPPIYSAaag 104 5*************.89***************5234444677888999999888876654444443344445555566665555 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +glkk+Lvfy+g+a kg+kt+W+mhe+rl Oropetium_20150105_27990A 105 rAGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 138 48888***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.31 | 1 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.93E-18 | 22 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-6 | 23 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MAPDYNLMMN KEPWIPRASS PSYLRRKVAG KRLSIEIIKE FDIYKHDPWD LPSEGQHDFH 60 GQGMVLLLPA GEEIPEQHPA QQGHRLRLLE GHRHRPPIYS AAAGRAGDSI GLKKSLVFYR 120 GSAGKGTKTE WMMHEFRLPP RPKAPARLRA LKKRRNMTYK KQQPTAGAGN VVAAAAAAAQ 180 PDSCSNTGSL ESDWRRQAPM NNNVSDDVYN SHCYQFDQGQ WNNAAVAQSE APQHSPEMAS 240 ALHHGGVYSS PAVPDYDLYY KDGCSWDDIG SMVMELTDPS VFYDCTLFA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-15 | 23 | 138 | 32 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_27990A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955426.1 | 2e-78 | transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A368PUM3 | 4e-77 | A0A368PUM3_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZV46 | 3e-77 | K3ZV46_SETIT; Uncharacterized protein | ||||
STRING | Si030477m | 6e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-22 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_27990A |