PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27624A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 320aa    MW: 34281.3 Da    PI: 11.1104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27624AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09105147344
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                                 W++eEd  l+ +v ++G g+W+ I  + +   Rt  q+  rw
  Oropetium_20150105_27624A 105 TWSKEEDADLAAGVLKYGEGNWDMILDKCNfRSRTSDQLSQRW 147
                                7**************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1198149IPR009057Homeodomain-like
PROSITE profilePS5129411.82298156IPR017930Myb domain
SuperFamilySSF466893.09E-11101153IPR009057Homeodomain-like
SMARTSM007171.6E-5102153IPR001005SANT/Myb domain
PfamPF002491.4E-6105147IPR001005SANT/Myb domain
CDDcd116601.21E-13106152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTVTWNVSLN TFLIQARKRY LIASSLAKML IYGSSREQNR VNLEASSQNS PNEKIVRVPS  60
DKQLAQGQRL TSVTGPISNS KQASQIGPSP DPLYGAPKKK KKIKTWSKEE DADLAAGVLK  120
YGEGNWDMIL DKCNFRSRTS DQLSQRWALI SKRPGLSKPA TSKQISIASS EERMATRKAL  180
SMAVDYNPCT RKSTVLRSGA QQHSIQHTST AFGPTIHEVK SAAAPFAAPR QTPVPMPVQV  240
PVPVTVPLPV TVQVQAPLMQ GQTPAQAAPP KGSTGSNKTR NNSKKQAVPQ NPAKVSSSIQ  300
AAAIAAGGRI ATPIALQTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27624A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462936.12e-84uncharacterized protein LOC8084050
TrEMBLC5XA314e-83C5XA31_SORBI; Uncharacterized protein
STRINGSb02g034880.16e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-14MYB_related family protein