PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_26988A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 402aa MW: 43045.8 Da PI: 9.9299

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26988A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.8	7.8e-18	13	141	2	126
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeek....ewyfFskrdkkya....tgkrkn 75 Gf+F+P+ ++v++yL + ++g+ ++++ ++ +d+y++eP L ++ + + + +fFs+ + + + + +r+ Oropetium_20150105_26988A 13 HLGFHFDPKPRDVVTYYLPRLIAGELMHVSIRpyVHAADVYECEPDVLAARSRP--TpfagDRFFFSTCKLQPRkmagKASRAV 94 57*********************9777553359999******843322..2233367999876543332223677999 PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 ra+ g W+++ +++v++ +g ++g + L + ++g tdW+m+e Oropetium_20150105_26988A 95 RAAGPGSWHTQSATTDVTNGEGVKIGEVRKLRYK----KNGAFTDWLMDEV 141 9999************************97....78899***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-19	10	165	IPR003441	NAC domain
PROSITE profile	PS51005	22.225	12	165	IPR003441	NAC domain
Pfam	PF02365	4.6E-10	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAPPPQPIES ALHLGFHFDP KPRDVVTYYL PRLIAGELMH VSIRPYVHAA DVYECEPDVL 60 AARSRPTPFA GDRFFFSTCK LQPRKMAGKA SRAVRAAGPG SWHTQSATTD VTNGEGVKIG 120 EVRKLRYKKN GAFTDWLMDE VSICSEGPDV AVNRQQPVFC KIYVSPRAKT DPSPTSASAG 180 QEADAAIGVA PPPPPPHQRR PGHDRFRDPA AVFPIIVTSV RTSDGSSTRF CCGSSNRRPS 240 SLHATASAGA ASLPASSAVH PDLYGGANII SPAACSHDRF HDAVAVFPSS SRPCVPPTAA 300 PPASSAVAPS ILDRPCYMPL QAPAPRRHLP HHQPSTRTSS VRQHLARRLQ SRPLPRCSRR 360 LSIIVTSTRS SDDRLHCFCR GSGDRPGHPS SGTACLPHAS A*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAPPPQPIES ALHLGFHFDP KPRDVVTYYL PRLIAGELMH VSIRPYVHAA DVYECEPDVL  60
AARSRPTPFA GDRFFFSTCK LQPRKMAGKA SRAVRAAGPG SWHTQSATTD VTNGEGVKIG  120
EVRKLRYKKN GAFTDWLMDE VSICSEGPDV AVNRQQPVFC KIYVSPRAKT DPSPTSASAG  180
QEADAAIGVA PPPPPPHQRR PGHDRFRDPA AVFPIIVTSV RTSDGSSTRF CCGSSNRRPS  240
SLHATASAGA ASLPASSAVH PDLYGGANII SPAACSHDRF HDAVAVFPSS SRPCVPPTAA  300
PPASSAVAPS ILDRPCYMPL QAPAPRRHLP HHQPSTRTSS VRQHLARRLQ SRPLPRCSRR  360
LSIIVTSTRS SDDRLHCFCR GSGDRPGHPS SGTACLPHAS A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26988A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	4e-11	NAC domain containing protein 53

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26988A