PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26877A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 472aa    MW: 49898.3 Da    PI: 9.8949
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26877AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1742.1e-23348410163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN aL+ el++lkk ++ +++++
  Oropetium_20150105_26877A 348 ERELKRERRKQSNRESARRSRLRKQQECEELGKKVAELTTENNALRAELDKLKKACQDMEADN 410
                                89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165968.6E-8216325No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-16345407No hitNo description
PfamPF001701.6E-20348410IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-20348412IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.955350413IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-11351405No hitNo description
CDDcd147026.24E-21353404No hitNo description
PROSITE patternPS000360355370IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MQPTGGTESD VPSTCRHRWC AGRPVRGKNH PEAATWSRQR YGHAGESYAW RAGTETLASK  60
RLFAPSRPCA RRFPTPPHDL GCCCFRLRSW RRPPTSSPSR RSRPPRRGTA AVTAAVAVPQ  120
THAEWAASIQ AYYAAAGHPY AWPAQHLMAA AAAGATYGAP VPFPVYHPGA AAAYYAHASM  180
AAGLPYPTAE AAAAAAAAAA EGKGKGKGGG ASPEKGSSGA PSGEDASRSG DSGSDESSDT  240
RDDDTDHKDS SVPKKRKSGN TSAEGEPSHA ALVHYPAVES PFPVKGRSAS KLPVSAPGRA  300
ALPNATPNLS IGMDLWSASP ALAVPAVQGE ANPGLALARR DSAAQLDERE LKRERRKQSN  360
RESARRSRLR KQQECEELGK KVAELTTENN ALRAELDKLK KACQDMEADN SRLMGGAVHS  420
QEPSVTTTLG MSIEAPKPQK HDDEGQLRKN TNNNSNGNYV GGSHKQEANT R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364370RRSRLRK
2364371RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26877A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955801.10.0DNA-binding protein EMBP-1
SwissprotP250321e-61EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A446KYA60.0A0A446KYA6_TRITD; Uncharacterized protein
STRINGPavir.Bb00931.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-20basic region/leucine zipper transcription factor 16