PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26758A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 347aa    MW: 36462.3 Da    PI: 5.47
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26758AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.7e-23237299163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N aL+ el++lkk ++ +++e+
  Oropetium_20150105_26758A 237 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAANGALRLELDQLKKACEDMEAEN 299
                                89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-16232296No hitNo description
PfamPF001701.6E-20237299IPR004827Basic-leucine zipper domain
SMARTSM003384.9E-21237301IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.507239302IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-10240294No hitNo description
CDDcd147021.81E-19242292No hitNo description
PROSITE patternPS000360244259IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASSTSTSGD ERPAGVPLDP SSVAAPGPQT HAEWTASMQA YYAAAAQQHM VAAAAYGAPV  60
PFPVYHPAAY YAHASMATVM NADLGSSHSL IPGAATHGVP YPAAEAAMVS GGGSEEDSSD  120
KREEEPNADL KVLPSAKRRK PSNANVKGES SSQAGATQET AAAAVGLPFA AKGRPASKLP  180
VPTAEAERAA VSDAAPNLNI GMDIWGRPPK AETSEQGEVN AGALSQRAGA LSQMEDEREL  240
KRERRKQSNR ESARRSRLRK QQECEELAQK VTDLTAANGA LRLELDQLKK ACEDMEAENS  300
QLRVEMEEMD RPGGVSTTLS IQTDASKIHP GNNGHLQKNR DDDGKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259RRSRLRK
2253260RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26758A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317831.13e-97DNA-binding protein EMBP-1 isoform X1
TrEMBLA0A368SCZ71e-100A0A368SCZ7_SETIT; Uncharacterized protein
STRINGSi039367m7e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-19basic region/leucine zipper transcription factor 16