PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_26720A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 630aa MW: 71866.5 Da PI: 6.7309

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26720A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	304.6	2.4e-93	250	619	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lL++cA+av+ +++ a +lL++++++as +gd+ qRla+yf++AL+arl++++++l++ l +++ s ++e l+a+klf Oropetium_20150105_26720A 250 STLLIHCAQAVAVNNHMIAGELLKQIKQHASATGDARQRLAQYFAKALEARLLGTGNQLFRLLMAERPS---VVEFLNAYKLFM 330 579*******************************************************999998888...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167 + + k+++ +I++ + + r+Hi+D+++ +G++W L++ La+R+++ p+l+iT+vg ++++ +++ee g+rL+ Oropetium_20150105_26720A 331 ASCCFNKIAFNFSIMTIMDTIVDKGRLHIVDYGMHYGFHWGGLIRWLAARDGSRPELKITAVGWSQNTlcPDQRIEEQGNRLSM 414 ************************************************************999999********** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhn 249 A+e+g+pf+f++ ++k++e++ +e+L+++ gE+l+V+ ++ +l+desv+ ++ +rd+vL+ +++++P++++ + ++++ Oropetium_20150105_26720A 415 CAREFGLPFKFDF-ITKKWENVCIEDLDTDDGEVLIVHDLFNFRSLMDESVCYDKpsPRDTVLNNIRKMRPDLFIQSIVNCSY- 496 *********.7********************************9998889*********************. PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ++sFl rf + l yy++lfd+l+a++pr+s+ ++E+++ +r+i n++aceg + e++++W+ r ++aG++++pl+ ++ Oropetium_20150105_26720A 497 GSSFLSRFRDLLFYYTSLFDMLDATMPRDSKSLLVLEQQWYSRHILNIIACEGGDLMGHPEKYKQWQVRNQRAGLRQLPLKPYI 580 679***************************************************************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +k k ++k+++d +++ e+ ++l++gW++r+L++ SaW Oropetium_20150105_26720A 581 VKVLKEKVKKHHKD-FMLAEDGQWLLQGWMGRTLFAHSAW 619 ********77.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.308	223	601	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-91	250	619	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MMVARVKQIK ARVTVTTRSS SAKSLPLYHN MATTPEEFFV DGLMVPAPPS PSVFLDLPPT 60 PDGNSEDPPF PDNMVPPYIF HMVVEDDIDN RLFNDNRDNT KGYKELWQGG SGDQSTPSSQ 120 FSMGADVVGA FLKGMEEAVK FLPRDNNFGM DGVVNQVFRE SKNHKATKKR NKIDDYIDEE 180 EVTRTRKAVM GMIEEPEEIG VHDILDDMML HAYEICIKEM EKLHIAMNTE GKKHKTKGRS 240 KSERDVVDLS TLLIHCAQAV AVNNHMIAGE LLKQIKQHAS ATGDARQRLA QYFAKALEAR 300 LLGTGNQLFR LLMAERPSVV EFLNAYKLFM ASCCFNKIAF NFSIMTIMDT IVDKGRLHIV 360 DYGMHYGFHW GGLIRWLAAR DGSRPELKIT AVGWSQNTLC PDQRIEEQGN RLSMCAREFG 420 LPFKFDFITK KWENVCIEDL DTDDGEVLIV HDLFNFRSLM DESVCYDKPS PRDTVLNNIR 480 KMRPDLFIQS IVNCSYGSSF LSRFRDLLFY YTSLFDMLDA TMPRDSKSLL VLEQQWYSRH 540 ILNIIACEGG DLMGHPEKYK QWQVRNQRAG LRQLPLKPYI VKVLKEKVKK HHKDFMLAED 600 GQWLLQGWMG RTLFAHSAWV AEAEGSISD*

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MMVARVKQIK ARVTVTTRSS SAKSLPLYHN MATTPEEFFV DGLMVPAPPS PSVFLDLPPT  60
PDGNSEDPPF PDNMVPPYIF HMVVEDDIDN RLFNDNRDNT KGYKELWQGG SGDQSTPSSQ  120
FSMGADVVGA FLKGMEEAVK FLPRDNNFGM DGVVNQVFRE SKNHKATKKR NKIDDYIDEE  180
EVTRTRKAVM GMIEEPEEIG VHDILDDMML HAYEICIKEM EKLHIAMNTE GKKHKTKGRS  240
KSERDVVDLS TLLIHCAQAV AVNNHMIAGE LLKQIKQHAS ATGDARQRLA QYFAKALEAR  300
LLGTGNQLFR LLMAERPSVV EFLNAYKLFM ASCCFNKIAF NFSIMTIMDT IVDKGRLHIV  360
DYGMHYGFHW GGLIRWLAAR DGSRPELKIT AVGWSQNTLC PDQRIEEQGN RLSMCAREFG  420
LPFKFDFITK KWENVCIEDL DTDDGEVLIV HDLFNFRSLM DESVCYDKPS PRDTVLNNIR  480
KMRPDLFIQS IVNCSYGSSF LSRFRDLLFY YTSLFDMLDA TMPRDSKSLL VLEQQWYSRH  540
ILNIIACEGG DLMGHPEKYK QWQVRNQRAG LRQLPLKPYI VKVLKEKVKK HHKDFMLAED  600
GQWLLQGWMG RTLFAHSAWV AEAEGSISD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-37	231	620	1	378	Protein SCARECROW
5b3h_D	3e-37	231	620	1	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26720A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791279.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2T8IAE5	0.0	A0A2T8IAE5_9POAL; Uncharacterized protein
STRING	Pavir.Hb00039.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-115	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26720A