PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26569A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 276aa    MW: 30514.9 Da    PI: 11.0599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26569AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.93.4e-224113633117
                        NAM  33 v.ikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...........kgelvglk 103
                                v i++++i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v ++           ++ lvg+k
  Oropetium_20150105_26569A  41 VdIPDIRILAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVTvpagaaggagnQTVLVGMK 122
                                4499************43..3447899************************************99998888877655555**** PP

                        NAM 104 ktLvfykgrapkge 117
                                ++Lvfy+g+ p+g+
  Oropetium_20150105_26569A 123 RSLVFYRGKPPSGS 136
                                **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.31210178IPR003441NAC domain
SuperFamilySSF1019414.84E-2142139IPR003441NAC domain
PfamPF023651.6E-753130IPR003441NAC domain
SuperFamilySSF1019414.84E-21166178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAKEAVKTQL PPGFRXXXXX XXXXXXXXXR XXXXXXXXXX VDIPDIRILA HDPSDLLPPG  60
WSEQERYFFT CKEAKYVKGR RANRATGAGY WKATGKEKPV AVTVPAGAAG GAGNQTVLVG  120
MKRSLVFYRG KPPSGSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXW VLCRVFRKKG  180
SNSNSNAAAS SSRXXXXXXX XXXXXXXXRQ ASVGFIDFFA RAAADAARGT GTQRRAASPV  240
VSSSCLTDXX XXXXXXXXXH QQQCREQETT SRGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-13718112171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26569A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.16e-69NAC domain-containing protein 83
TrEMBLA0A3L6RAA23e-72A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGPavir.Cb00769.1.p1e-67(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-25NAC domain containing protein 83