PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_26345A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 23247 Da PI: 8.1935 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.4e-14 | 14 | 60 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 rg+W++eEd +l v+++G+ +W + +++ g++R++k+c++rw++ Oropetium_20150105_26345A 14 RGPWSQEEDAILRSFVQRFGNAgNWIALPQKAGLKRCGKSCRLRWLN 60 89******************99***********************98 PP | |||||||
2 | Myb_DNA-binding | 28.8 | 2.8e-09 | 86 | 111 | 19 | 46 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqk 46 G++ W+ Ia++++ gRt++++k++w++ Oropetium_20150105_26345A 86 IGSK-WSVIASRLP-GRTDNDVKNYWNT 111 6888.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.103 | 9 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-16 | 12 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 13 | 115 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.65E-19 | 14 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-12 | 14 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-6 | 16 | 60 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 63 | 113 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-12 | 85 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 85 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.29E-6 | 89 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRSPCCDKT RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN 60 XXXXXXXXXX XXXXXXXXXX XXXXEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRFLAA 120 SAVRDGTPXX XXXXXXXSSE DDATASAGKQ PTKDDRDSSP APPPTPSFAN PDIAAISAAD 180 DDDELMSYVA PTVQCEYFLE LVQLEAFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_26345A |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241370 | 1e-140 | AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008675095.1 | 2e-64 | transcription factor MYB30 isoform X2 | ||||
TrEMBL | C5XID7 | 2e-62 | C5XID7_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G167829_P01 | 7e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 1e-48 | myb domain protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_26345A |