PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26117A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 306aa    MW: 34981.1 Da    PI: 7.7007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26117AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81e-49321633128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 
                                pGfrFhPtd+elv +yLk+kve+k +++ ++i+e+d+yk++PwdLp+      +  a+ekewyfF+ r +ky+++ r+nr+t s
  Oropetium_20150105_26117A  32 PGFRFHPTDQELVGFYLKRKVERKGFSI-DIIQETDVYKHDPWDLPSearhvvQQGAGEKEWYFFCLRGRKYRNSIRPNRVTGS 114
                                9***************************.99**************954677654445889************************ PP

                        NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                g+Wkatg dk++++  ++++vglkk+Lv+y+g+a kg+ktdW+mhe+rl
  Oropetium_20150105_26117A 115 GFWKATGIDKPIHDGgGESVVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163
                                **************866677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.39130185IPR003441NAC domain
SuperFamilySSF1019413.14E-5431185IPR003441NAC domain
PfamPF023654.9E-2532163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEKKPIMEME ERMKDTGGSI EDGRIEDDME FPGFRFHPTD QELVGFYLKR KVERKGFSID  60
IIQETDVYKH DPWDLPSEAR HVVQQGAGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDKPIHDGG GESVVGLKKS LVYYRGSAGK GTKTDWMMHE FRLPSSSSAD FQDAEIWTVC  180
RIFKRNLSNN RRFQQQKREK RSHQQQQKQS YYGYQHPLYT AGCASMATSF ESMTRDLSEA  240
SHHNCHQFLL HGGFHSATAP PPDVTTTASA SPSALAWSDL TSFASNTWDE LGRILDISTD  300
MTTYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-483219119171NO APICAL MERISTEM PROTEIN
1ut4_B6e-483219119171NO APICAL MERISTEM PROTEIN
1ut7_A6e-483219119171NO APICAL MERISTEM PROTEIN
1ut7_B6e-483219119171NO APICAL MERISTEM PROTEIN
3swm_A5e-483219122174NAC domain-containing protein 19
3swm_B5e-483219122174NAC domain-containing protein 19
3swm_C5e-483219122174NAC domain-containing protein 19
3swm_D5e-483219122174NAC domain-containing protein 19
3swp_A5e-483219122174NAC domain-containing protein 19
3swp_B5e-483219122174NAC domain-containing protein 19
3swp_C5e-483219122174NAC domain-containing protein 19
3swp_D5e-483219122174NAC domain-containing protein 19
4dul_A6e-483219119171NAC domain-containing protein 19
4dul_B6e-483219119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26117A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809001.11e-112transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-76NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1E5WKN51e-127A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1
STRINGPavir.Ca02638.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-78NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]