PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_26056A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 27424.9 Da PI: 4.2111 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.4 | 1.1e-13 | 37 | 86 | 77 | 128 |
NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k+gyWk +++ ++s + vg+k++L fy+g+ap g++t W+mhey++ Oropetium_20150105_26056A 37 KAKNGYWKPVDSSRILTS--TPIVGVKTILEFYEGHAPCGKRTGWMMHEYQV 86 5789*****999776666..889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.541 | 1 | 107 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-19 | 12 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-7 | 37 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MESADAESMQ PRSGSVWYLK WSDGQGPYDS AESSIGKAKN GYWKPVDSSR ILTSTPIVGV 60 KTILEFYEGH APCGKRTGWM MHEYQVEQND EANLPQDYKS LCKVFLQSDK NAESGQSSLN 120 ANAPNDSFES YLQYLAKIEE PEHGQRTEID VDDIAAHDNI VTDDYIELKD LLNSEASSST 180 SENTSKRSMI SEEYFDSDAF LKEIMEDADG QHNNHNFSIA APSKSANVVI SPTEQGNFPS 240 VSFFLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_26056A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797453.1 | 3e-98 | NAC domain-containing protein 76-like isoform X1 | ||||
Refseq | XP_025797454.1 | 4e-98 | NAC domain-containing protein 76-like isoform X2 | ||||
Refseq | XP_025797456.1 | 3e-98 | NAC domain containing protein 52-like isoform X4 | ||||
Refseq | XP_025797457.1 | 3e-98 | NAC domain containing protein 52-like isoform X4 | ||||
TrEMBL | A0A3L6SEL4 | 3e-98 | A0A3L6SEL4_PANMI; Protein BEARSKIN2-like | ||||
STRING | Pavir.Ib03017.1.p | 3e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 3e-14 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_26056A |