PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25655A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 371aa    MW: 38348.6 Da    PI: 8.5051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25655AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011163185123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C+k+F++   L  H  +H
  Oropetium_20150105_25655A 163 YECKTCNKRFPSFQALGGHRTSH 185
                                99*********999998888777 PP
2zf-C2H211.60.00087272294123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  F +   L  H+r+H
  Oropetium_20150105_25655A 272 HECSICGAEFASGQALGGHMRRH 294
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-8162185No hitNo description
PfamPF139126.7E-13162187IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346163190IPR007087Zinc finger, C2H2
SMARTSM003550.049163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-8267294No hitNo description
PfamPF139121.6E-12271295IPR007087Zinc finger, C2H2
SMARTSM003550.016272294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429272299IPR007087Zinc finger, C2H2
PROSITE patternPS000280274294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGMGGAVVRR QDEKGEAAGT AGLVPPVLVK GKRSKRQRVH APPVVVTAAE WSSSAASATA  60
TAAHPGGGEE QADSSSAGTT TWDEVASTGG TACVXXXXXX XXXXXMALCL VLLSRGEPAA  120
KVPVAAAAAV VAASNKEEAT TTRSRTRRPA GDGASGRGGE VVYECKTCNK RFPSFQALGG  180
HRTSHKKPRL LLPPSSEDNK QSSSPAIVET TSVSVTATSP PPPPPVADEK EGAAADATSV  240
LATSVVPVPK QEPPPAATSS SSSRHQQHPR VHECSICGAE FASGQALGGH MRRHRPLVPA  300
AASRDDAAVP PLPPMPRKEK SLLELDLNMP APSDEPEVTS PRFNFNAVVA VPERKPAPML  360
FPAALVDCHY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25655A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0649853e-31BT064985.1 Zea mays full-length cDNA clone ZM_BFc0090D09 mRNA, complete cds.
GenBankBT0657093e-31BT065709.1 Zea mays full-length cDNA clone ZM_BFc0038P12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825001.13e-80zinc finger protein ZAT5-like
TrEMBLA0A3L6Q6624e-82A0A3L6Q662_PANMI; Zinc finger protein ZAT5-like
STRINGPavir.J13454.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-35C2H2 family protein