PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25594A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 602aa    MW: 68458 Da    PI: 5.3972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25594AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018569588322
                                ETTTTEEESSHHHHHHHHHH CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                                C+ Cg++F ++  L +H+  
  Oropetium_20150105_25594A 569 CETCGRTFESRNKLFSHLEE 588
                                *****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.4E-21882IPR001623DnaJ domain
SuperFamilySSF465658.77E-229113IPR001623DnaJ domain
SMARTSM002714.1E-201071IPR001623DnaJ domain
CDDcd062577.35E-171168IPR001623DnaJ domain
PROSITE profilePS5007617.8171179IPR001623DnaJ domain
PfamPF002264.5E-191276IPR001623DnaJ domain
PRINTSPR006251.2E-111331IPR001623DnaJ domain
PRINTSPR006251.2E-113146IPR001623DnaJ domain
PRINTSPR006251.2E-115171IPR001623DnaJ domain
PROSITE patternPS0063605675IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.87E-11287333No hitNo description
SMARTSM004512.7E-5297331IPR003604Zinc finger, U1-type
SMARTSM003557.3300324IPR015880Zinc finger, C2H2-like
PfamPF121711.7E-10300325IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280302324IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118567596IPR007087Zinc finger, C2H2
SMARTSM003556.8567591IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280569591IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MASSAAPPKR CYYEILGLSR DCSPTDIKFA FRRLALTLHP DKQPPGSDIA AATAAFQELQ  60
HAHSVLSDPH ERAYYDSHRS QILFSDPSAS ASEGAASPVP DLFAFFSSSA FSGFSDTGRG  120
FYKVYGDVFD KVFAQELAYA RRMGVQEPST PPVIGNLDSP YAQVTAFYSY WLGFATVMDF  180
GWAAEWDAAR GENRRVRRLM EEDNKKAMRK ARREYNDAVR GLAAFCKKRD KRVVDMALKK  240
KAEEEKRKAE EMKRKKEEEK RKKERAMAYQ EPDWARVEEE EGLFDEEEEE EMRAKRKEEL  300
YCVACNKKFK SDKQWKNHEQ SKKHRDKVAE LRMVFXXXXX XXXXXXXXXX GDLDEVDVEF  360
DFKPAQESDE NESEWSDAAE ELAEELEEGL DVHDNEDGDD DLDNAEQEVG SYDEKSVLEA  420
MLSSRTNKKG IYVPAEASSG SIELDDDDIT EFNNVKRKGR RRRASKKEQD KDTYADHEQQ  480
RNSKVQPEES GHDNDENGVD DKMEGPSSSN EDAASASKGD QQKGKNSNPK KNKKDKKATE  540
KKATVPTDQK STSKGKKQKE VTKAPSMDCE TCGRTFESRN KLFSHLEETG HAMLKGRQKK  600
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245262KRKAEEMKRKKEEEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25594A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237233.20.0DNAJ protein JJJ1 homolog
TrEMBLA0A0D9XZL40.0A0A0D9XZL4_9ORYZ; Uncharacterized protein
STRINGLPERR12G10830.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-110DNAJ heat shock N-terminal domain-containing protein