PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_25384A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 115aa MW: 13047.3 Da PI: 9.8186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.7e-11 | 38 | 78 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Oropetium_20150105_25384A 38 KKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 78 89*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00253 | 2.5E-9 | 6 | 38 | IPR001209 | Ribosomal protein S14 |
PROSITE profile | PS50888 | 13.376 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 38 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-11 | 38 | 82 | No hit | No description |
SMART | SM00353 | 1.0E-7 | 38 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 38 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 38 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MDLFTRVCAN PHGLIRKYGL MCCRQCFRSN AKDIGFIKKR RERINEKLRV LQQLIPNGTK 60 VDISTMLEEA VQYVKFLQLQ IKLLSSDETW MYAPLAYHGV GIDLSASANP ATKQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_Bd | 1e-16 | 5 | 40 | 21 | 56 | 40S ribosomal protein S14 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_25384A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF457936 | 3e-31 | AF457936.1 Zea mays clone cho1c.pk002.j14, mRNA sequence. | |||
GenBank | DQ245141 | 3e-31 | DQ245141.1 Zea mays clone 13268 mRNA sequence. | |||
GenBank | EU954549 | 3e-31 | EU954549.1 Zea mays clone 1470027 40S ribosomal protein S29 mRNA, complete cds. | |||
GenBank | EU957916 | 3e-31 | EU957916.1 Zea mays clone 1633015 40S ribosomal protein S29 mRNA, complete cds. | |||
GenBank | EU962458 | 3e-31 | EU962458.1 Zea mays clone 242876 40S ribosomal protein S29 mRNA, complete cds. | |||
GenBank | EU965555 | 3e-31 | EU965555.1 Zea mays clone 286898 40S ribosomal protein S29 mRNA, complete cds. | |||
GenBank | EU969735 | 3e-31 | EU969735.1 Zea mays clone 334813 40S ribosomal protein S29 mRNA, complete cds. | |||
GenBank | EU975329 | 3e-31 | EU975329.1 Zea mays clone 487665 40S ribosomal protein S29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575800.1 | 8e-38 | transcription factor bHLH139 isoform X1 | ||||
Refseq | XP_024310675.1 | 3e-38 | transcription factor bHLH84 isoform X2 | ||||
Swissprot | Q7XHI9 | 2e-34 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | I1IK27 | 2e-36 | I1IK27_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G12615.1 | 3e-37 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 9e-37 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_25384A |