PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25236A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 332aa    MW: 36830 Da    PI: 10.1191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25236AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-114613596
                               EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                                ++l+ +sg++W+v l  +    ++ +t+GWk+Fv+++ L+ g  + F + g s+f   v +
  Oropetium_20150105_25236A  4 LVSLKGPSGNTWKVLL--TSDAHGFAFTEGWKKFVDDHCLELGQLLKFNYYGCSQF--SVLI 61
                               5899************..888889*************************9886777..6655 PP
2B338.22.5e-121922741998
                                -HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  19 pkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                pk+  ++     + k+e + t+   + ++g+sW+v + y+  sg   +++ W +F   n+L+e D++vF+l++  + + +v+++
  Oropetium_20150105_25236A 192 PKRQSSAQkkpeKRKPEPEATIDTSNtSKGKSWDVSYVYDDDSGVAAFSSAWGKFFLGNNLEEFDVCVFELNK--KDNIKVHIY 273
                                555554445565333444456666665889****************************************865..555688887 PP

                                - CS
                         B3  98 r 98 
                                r
  Oropetium_20150105_25236A 274 R 274
                                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.211165IPR003340B3 DNA binding domain
SMARTSM010191.2165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-14366IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9461IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-13465IPR015300DNA-binding pseudobarrel domain
CDDcd100178.46E-11562No hitNo description
SMARTSM010190.0075176276IPR003340B3 DNA binding domain
PROSITE profilePS508639.869212276IPR003340B3 DNA binding domain
PfamPF023623.3E-10212274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-12218274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-11219274IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-11221274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
PNRLVSLKGP SGNTWKVLLT SDAHGFAFTE GWKKFVDDHC LELGQLLKFN YYGCSQFSVL  60
IFLPSGVMSK SARDVRPSEE EGVLDVDDVA GASISSLSIK HNNESARVRQ VNNVRESGIA  120
PKRHSSVPRK SKNWKPQAII DTSNAAPVVI NGEKGLVCVA STLKVSTPFV KPSGRSTRAR  180
QEDNVMKNVI TPKRQSSAQK KPEKRKPEPE ATIDTSNTSK GKSWDVSYVY DDDSGVAAFS  240
SAWGKFFLGN NLEEFDVCVF ELNKKDNIKV HIYRVVPIVT PFMRRSPLSK LLHVTRCVAQ  300
VFEREGNSIS HKLEPRPQTK PYLQLPLSHH A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25236A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-10B3 family protein