PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25135A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 381aa    MW: 40942.2 Da    PI: 7.7172
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25135AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001235257123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+Cp Cg+ F +   L  H  +H
  Oropetium_20150105_25135A 235 YECPGCGRAFQSYQALGGHRASH 257
                                99********9999888888777 PP
2zf-C2H210.90.0014316338123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp+C k+F +   L  H r+H
  Oropetium_20150105_25135A 316 FECPICFKVFGSGQALGGHKRSH 338
                                89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-41437IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.25E-81436No hitNo description
PfamPF139121.1E-51436IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6161441IPR007087Zinc finger, C2H2
SMARTSM003550.0841436IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-8230257No hitNo description
PfamPF139127.4E-11234259IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492235262IPR007087Zinc finger, C2H2
SMARTSM003550.21235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
PfamPF139123.5E-11316339IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889316339IPR007087Zinc finger, C2H2
SMARTSM003550.15316338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDDVVVLGIN SAQHSCKVCG KGFPCGRSLG GHMRSHSLAX XXXXXXXXXX XXXNSAGNGG  60
GGYGLRENPK KTRRLSGGEL FPSCKLPVLD DHCGGDHDAA PEDDDDEEAM LMPPTEAAAA  120
VLMPAPRRRR RSMRVPAPAP PAPFDREPED VALCLIMLSR DTPARWGGSA PAAADGKKRR  180
RRATYHYNHN DADSDDTVST FFQSYDDDVE IARSRKRKPA AAPYGGDHEK PRGRYECPGC  240
GRAFQSYQAL GGHRASHKRI NSNCCITKVA LDHHSELSVE TTNTTSISTA SAPASPEVDR  300
AALAAHAKKT SGSNKFECPI CFKVFGSGQA LGGHKRSHSI AGELYYERAN NAATVVEQPE  360
QSMVSARFLD LNLPAPGAED *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25135A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792036.11e-106zinc finger protein ZAT4-like
TrEMBLA0A3L6TTF01e-109A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like
STRINGPavir.Ia03028.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-27C2H2-like zinc finger protein