PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24747A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 349aa    MW: 38169.5 Da    PI: 6.5025
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24747AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.81.6e-21139201259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                                +Dgy+WrKYG K+++g++f+rsY+rCt++   gC ++k v++++  +dp v+e+tY++eH+++
  Oropetium_20150105_24747A 139 EDGYEWRKYGEKKINGTQFTRSYFRCTYKydkGCLATKYVQQKDntSDPPVFEVTYNNEHTCN 201
                                7***************************99999*******99752269*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-22131201IPR003657WRKY domain
SuperFamilySSF1182901.57E-20132202IPR003657WRKY domain
SMARTSM007746.4E-31138202IPR003657WRKY domain
PROSITE profilePS5081117.454139203IPR003657WRKY domain
PfamPF031061.9E-23139200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPEKDNQEAA VREVYRVYEL IKTQQPLLLL VHQHHLGTTT HHHHQLAQSL LSEALRALNI  60
ALSAMKQQLH QDTNRSTDPS APLSSSSGLG TASAAAAADS KLGATAGTSK RSGKRRRPVP  120
DEGKKNSSSW VNLTTMPYED GYEWRKYGEK KINGTQFTRS YFRCTYKYDK GCLATKYVQQ  180
KDNTSDPPVF EVTYNNEHTC NCTSSTSSSP HTKTINSNGC YNSNLLPTTR GADTSSSDHP  240
IKKEAIAVLP PLADVPATVP FGDQIPCQEP PLFPIGDHCV SVSAGDHAGI PFATRSSTGN  300
SSCVVSGVFC DELDMGPIMV EPLFLGDDDL ELHDLDERLL LYNSFNYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-14139200968OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24747A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316320.12e-72probable WRKY transcription factor 53
TrEMBLA0A1Z5RH154e-71A0A1Z5RH15_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46