PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24745A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 219aa MW: 24606.3 Da PI: 9.1166 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.9 | 3.5e-22 | 43 | 104 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s fpr YYrCt++ +C+++k+v+++ ++dp ++ +tY ++H+++ Oropetium_20150105_24745A 43 DDGHQWRKYGEKKLSNSSFPRFYYRCTYKnemKCTATKQVQQKnTSDPPLFSVTYFNHHTCS 104 8***************************99999*******875167**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-23 | 30 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-22 | 35 | 105 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.283 | 37 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-32 | 42 | 105 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 43 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MALDSVPLYP GGDLESSRAT RTHQRISRKE QRSWTADTYA PYDDGHQWRK YGEKKLSNSS 60 FPRFYYRCTY KNEMKCTATK QVQQKNTSDP PLFSVTYFNH HTCSINSMGS HRGAGVQSPS 120 KEVSICFSAH SSSEQPTFLT SAATLPSPNI QPYRANQQFD RSAYARQFQL TGTTNSPVMM 180 EVDNFSEANS FSSSSTGALS RTLLPIGQSR CIEYFHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 43 | 103 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24745A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058629 | 1e-66 | KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827915.1 | 9e-98 | probable WRKY transcription factor 46 isoform X1 | ||||
TrEMBL | A0A2T7E4I6 | 1e-98 | A0A2T7E4I6_9POAL; Uncharacterized protein | ||||
STRING | Si011007m | 2e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 1e-18 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24745A |