PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24347A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 168aa MW: 17531.8 Da PI: 7.6863

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24347A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.6	6.7e-32	48	116	5	73
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++ ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Oropetium_20150105_24347A 48 RRPSTDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 116 57889********************************************************77776333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.205	51	105	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.2E-27	51	115	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSSPSELVLY NLVPAQTLNP TPATAADLSI STAAPQPAKE VPIRGRVRRP STDRHAKVAG 60 RGRRVRIPAM VAARVFQLTR ELGHRTDGET IEWLLRQAEP SIIAATGTGV TPEEAPPASV 120 PVAFSSAAGG SAAPYVPTYY TALLMQEPPA GDQPAASTPV TNGEENQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24347A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975168.1	7e-65	transcription factor PCF1-like
Swissprot	O23875	5e-56	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6G9C8	3e-62	A0A3L6G9C8_MAIZE; Transcription factor PCF1
TrEMBL	A0A3L6Q550	3e-62	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	GRMZM2G096610_P01	2e-62	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24347A