PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24003A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 363aa    MW: 38283.1 Da    PI: 6.6499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24003AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-27106166259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++d  v+++tY+geH+++
  Oropetium_20150105_24003A 106 DDGFSWRKYGQKDILGAKFPRGYYRCTYRgaqGCLATKQVQRSDSDLCVFDVTYHGEHTCH 166
                                8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2798167IPR003657WRKY domain
PROSITE profilePS5081123.032100163IPR003657WRKY domain
SuperFamilySSF1182906.54E-25103167IPR003657WRKY domain
SMARTSM007741.8E-39105167IPR003657WRKY domain
PfamPF031062.0E-25106166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQQDGAGGEG NNIHLLLSIL ADGEQQARQL AETMVPDDPR LGGAVDHYRG AARRLQRTLG  60
KAVSVARVIE AAAAAASRGT DSPRKGLPRW TAKFRLPDAS SEATPDDGFS WRKYGQKDIL  120
GAKFPRGYYR CTYRGAQGCL ATKQVQRSDS DLCVFDVTYH GEHTCHQKPQ HQQQRHAYAS  180
TASPRGATGI VGHPPPPPPP PLQDPSTELV TGFEDCLKVE TADASPLHDH DRDYHNSSAA  240
APFTFPSAVP PHAAGPSFSP SPAAAGSSYY AVPHCLVSPG SGNSYDDYSS CYSYGCARGA  300
ESELAEVFSR ATSAPAATVG TAAAADLSAA AAGFDYSLYH HDEFDPHLPF APSGAGSGPP  360
RH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-201071691879Disease resistance protein RRS1
5w3x_D3e-201071691879Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24003A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.11e-96probable WRKY transcription factor 53
TrEMBLA0A1E5W0A11e-101A0A1E5W0A1_9POAL; Putative WRKY transcription factor 53
STRINGSi008812m2e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-35WRKY DNA-binding protein 30