PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23718A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 341aa    MW: 36113.6 Da    PI: 10.1727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23718AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011143165123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  F     L  H+r+H
  Oropetium_20150105_23718A 143 HECHICGLGFEMGQALGGHMRRH 165
                                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.256991IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.08E-66991No hitNo description
PfamPF139121.5E-106993IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7026996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-6138165No hitNo description
PROSITE profilePS501579.182143170IPR007087Zinc finger, C2H2
SMARTSM003550.49143165IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-10143168IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6242264No hitNo description
PROSITE profilePS501579.889242269IPR007087Zinc finger, C2H2
SMARTSM003551.1242264IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-9242266IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6296323No hitNo description
PROSITE profilePS501579.058301328IPR007087Zinc finger, C2H2
SMARTSM003550.17301323IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-9301325IPR007087Zinc finger, C2H2
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKHPREEEVV SLALSLTTTD SSSTSTEEGS AAAGGLGASS SSSAAAAAAK RARRRRRGPV  60
VATSGEGDFV CKTCNRAFPS FQALGGHRTS HLRGRGHGLE LGVVGAKALK QMHKQAPDYD  120
RNGAAATKKH RPEEEKKQQQ HPHECHICGL GFEMGQALGG HMRRHREELL ASGAADDWVW  180
RTQREVPVPA EPPYMAKHPR GEAGGEGVTL SLSLYPGGTG LPAERAKKQA RRGTADGAGG  240
EFVCKTCSRA FATFQALGGH RTSHLRGRHG LALGLTPSSP AKATAAKTTK EEEKPAASQQ  300
HQCHFCGAEF EMGQALGGHM RRHREAAAPQ APPVLLQLFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23718A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1013813e-43FP101381.1 Phyllostachys edulis cDNA clone: bphyem106p21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199616.12e-54zinc finger protein ZAT8-like, partial
TrEMBLA0A1E5V1M31e-104A0A1E5V1M3_9POAL; Uncharacterized protein
STRINGOPUNC03G36150.11e-88(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.18e-14C2H2 family protein