PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23149A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 718aa    MW: 77950.6 Da    PI: 6.998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23149AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152468147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Oropetium_20150105_23149A 24 RERWTEAEHKRFLEALKLYGRQ-WQRIEEHVG-TKTAVQIRSHAQKF 68
                               78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.8241973IPR017930Myb domain
TIGRFAMsTIGR015572.2E-162271IPR006447Myb domain, plants
SMARTSM007171.6E-122371IPR001005SANT/Myb domain
PfamPF002495.8E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-82464IPR009057Homeodomain-like
CDDcd001672.38E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MEVNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP NSPYPRKNGL CSETSTKEVP  120
NDKSTKSNVK SSNGNVEMAS DPSLQKLQRK DVSEKGSCSE VLTLFRDVPA ASFSSVNKSS  180
SNHGAPSGIE PTKQEFRDMT IMGKNSLLVA VHEDAKEISD REMEMLNGIH ISSKSDCPHD  240
CLHTSTQQIK LKPMSLETAC VESLTAKASH SGTEKSGATS IHVTGTDGSH PDQASDQEGA  300
NRRMNPCIHP TLSLDPKFNI NGTPLPCPHN YTAFPPMMPC NCNQDAYRSF INMSSTFSSM  360
LVSTLLSNPA IHAAARLAAS YWPAAENSSS VDPDQENPTA GVQGSNIGSR PSMASMVAAT  420
VAAASAWWAT QGLLPFVAPP MAFPFVPAPS AAFPTADVLR ASEKGIDCQV ENAQKESQEA  480
QHKNQSEALR VAAPSESDGS GKGDLALHTG LKTSPVQNGD TTPTTVADTS DVLRNKKKQD  540
RSSCGSNTPS SSDVEANNVP EKQDKAKDNG KQASCSNSSA GDTNRRFRSS GSTSDSWKEV  600
SEEGRLAFDA LFSREKLPQS FSPPQAEESK EISKEEDEVT MVKVDLNMNA TAIDHDLDTM  660
DVSRASFPNE LSQLKLKSRR TGFKPYKRCS VEAKDNRVST SDDVGTKRIR LESEAST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23149A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820794.10.0protein LHY isoform X1
RefseqXP_025820795.10.0protein LHY isoform X1
TrEMBLA0A2T8IF630.0A0A2T8IF63_9POAL; Uncharacterized protein
STRINGPavir.Fa01905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-40circadian clock associated 1