PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23025A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 281aa    MW: 29795.7 Da    PI: 6.6074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23025AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-09130174554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Oropetium_20150105_23025A 130 HSIAERLRRERIAERIRALQELVPNT-----NKTDRAAMLDEILDYVKFL 174
                                99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-15123184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14127185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-10131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGQQPPGGG EDDFLEHFFA FPSTGTGAHA GAGGGVPGDH PFPLALSLDA AADASGGGKP  60
DRDPVQLAGL FPPVFTGAGG MQQTNMRPAQ PHQVFHAQPK PGDGAMGSQP QPPAPRPKVR  120
ARRGQATDPH SIAERLRRER IAERIRALQE LVPNTNKTDR AAMLDEILDY VKFLRLQVKV  180
LSMSRLGGAG AVAQLVADIP LSVKGEASDS GSMQHVWEKW SSDGTEKQVA KLMEEDIGAA  240
MQFLQSKALC MMPISLAMAI YDTQHPQEGN SLKHEPNTSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23025A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-155transcription factor UNE12
SwissprotQ93Y002e-74BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A2S3GW171e-154A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-154(Panicum virgatum)
STRINGSb02g004570.11e-154(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-54bHLH family protein