PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22755A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 696aa    MW: 74125.5 Da    PI: 7.9865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22755AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30314370259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK+vk se+prsYY+Ct++gC+vkkkvers+ +++v+ei+Y+g+H h+
  Oropetium_20150105_22755A 314 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPGCQVKKKVERSH-EGHVTEIIYKGTHGHP 370
                                8****************************************.***************8 PP
2WRKY103.71e-32508566159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnhe
  Oropetium_20150105_22755A 508 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERASHDLKSVITTYEGKHNHE 566
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-28307372IPR003657WRKY domain
PROSITE profilePS5081123.192308372IPR003657WRKY domain
SuperFamilySSF1182905.23E-25310372IPR003657WRKY domain
SMARTSM007749.1E-33313371IPR003657WRKY domain
PfamPF031064.1E-23314370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-37493568IPR003657WRKY domain
SuperFamilySSF1182901.83E-28500568IPR003657WRKY domain
PROSITE profilePS5081137.769503568IPR003657WRKY domain
SMARTSM007741.0E-37508567IPR003657WRKY domain
PfamPF031065.1E-25509566IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MDGVVAIEEW KDPNPGPEAL MPGVLTGVFP SDTTGRHGNE GQQAGFEKHG FSVTTSSPQE  60
GGRSLPMTPE FGQKSGSGSS LAERMQARAG FRVEKLNTAF STAAGADNVV SGAPSPYLTI  120
PPGLSPATLL ESPVFLSNAM GQASPTTGKL FMSAGINDSN NANRFEGPPH GHGTGVFSFK  180
PLDLKSSHYI AEEKKSASIL MKVSTPTPYV FLQDSSLSNQ HPSLPSTQVS VKTETKHQTV  240
REVNLPAGQQ QQLNDGQTTM KRCTKLSRLA PDAAAGTEHV ISPPDRGRPA TEEGGDATGG  300
DFTGMATAAA APAEDGYSWR KYGQKQVKHS EYPRSYYKCT HPGCQVKKKV ERSHEGHVTE  360
IIYKGTHGHP MPAAAQGRRH PFGEADASDG RVGSHQWHGM QQDGGVDATS SPGELCDSST  420
SMQGARFGSP EGVDVVTSAA AVSDEVDGDR ATRGSLSREG GADADGDELE SKRRKLELES  480
YAIDRSNVSR AVREPRVVIQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCS  540
VRKHVERASH DLKSVITTYE GKHNHEVPAA RNSGHPNSAA PGAGAGARRL PDHHSSVQDG  600
LMRLGSCGFG GPRDPLVPMG NYPYSTLGAA LPSLPMPPGL GPVEGLKLPS MLAPSSAMHH  660
HHPLLRHRQA MEAAGLVAPN QFMHRGRLQL GHHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37314569878Probable WRKY transcription factor 4
2lex_A9e-37314569878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22755A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660941e-115BT066094.1 Zea mays full-length cDNA clone ZM_BFb0304M03 mRNA, complete cds.
GenBankEU9474031e-115EU947403.1 Zea mays clone 342377 mRNA sequence.
GenBankKJ7281721e-115KJ728172.1 Zea mays clone pUT6442 WRKY transcription factor (WRKY72) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
TrEMBLA0A3L6PRS40.0A0A3L6PRS4_PANMI; Putative WRKY transcription factor 34
STRINGSb06g019710.10.0(Sorghum bicolor)
STRINGGRMZM5G816457_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-77WRKY DNA-binding protein 2