PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22752A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 531aa    MW: 56697.7 Da    PI: 7.0586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22752AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00012359381123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C+ksFs++  L  H+  H
  Oropetium_20150105_22752A 359 HECQKCSKSFSTHQALGGHMAGH 381
                                78*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6482104IPR007087Zinc finger, C2H2
SMARTSM003550.0382104IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-484106IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-8357381No hitNo description
PROSITE profilePS501579.64359386IPR007087Zinc finger, C2H2
SMARTSM003550.066359381IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-7359381IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-8470497No hitNo description
SMARTSM003550.084475497IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9475498IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891475497IPR007087Zinc finger, C2H2
PROSITE patternPS000280477497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDLRAYYIQA AEAAAAAIHA EDDDDVVELT HNAVVLKFEV HAARTADVPA LHGSSALSPL  60
GAGNAEAGIK IVVEGNGGRR DLTCPECSKT FLSDKAMYGH LRSHPERGYK GANRPAVASP  120
TACAGDKRPR KALQKEVELP AMNMCAAEAV AAEKTMQREG ELLWNWSLTA KRGRSSSTPS  180
AGSAPLAEVH QSSRWYSEEE EEAAMILLDM AFLGATSSSE TQQSQLPVHA RYAKNQIPDV  240
EQPMPLDPCA QNKMSELMQQ MPLDHVPCTV MAHQKPETGH QIATAFAVES QLTPEVKELT  300
KQVDVPTKAV VDVVGDKKRK KRRVQDSEQT PGTASPADAA SVMPPAPRRF PSPASDKKHE  360
CQKCSKSFST HQALGGHMAG HNKHGAFHDD PARVQAMQNA MQNILAADRR LISYAIIDAT  420
VVAKAAVSGG GQGGSVPAEE QRTAVAGGDQ EGTVAGAGQE RRDDQPAAPM SSAPHVCPEC  480
NIAFRSGQAL GGHKRKHWFA EKRAKAALAA APRNFDLNEL PRDGGRDNNP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316320KKRKK
2316322KKRKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22752A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-11C2H2 family protein