PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22708A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 336aa    MW: 36868 Da    PI: 10.3008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22708AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013101119321
                                ETTTTEEESSHHHHHHHHH CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                                C  Cg++F+ ++ L rH  
  Oropetium_20150105_22708A 101 CRVCGRRFRERDALLRHFE 119
                                9****************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.42799127IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MFAPLPFLRR RLIATATKSI ASPFLRSLSI NTAPAVRKPA AAVAVLWDLA ASRPPSTLPL  60
YDAAVRLHLA ATSFGRLHLS AAFLHPSHRL PVPAAVTTNL CRVCGRRFRE RDALLRHFEA  120
IHTREHAKRQ ARIDSAHGGR RVRLAAELTL KISKYEKAAR ELAAAAAGRA SPADELHRAG  180
VKAELSRTPA ASLRERAQQV LDEGSVRCLI LVSGREELSP LLRLAREGGV RSVVVGGESG  240
LARLADAGFS WKDVIGGKVR KAAPSLSEKW RDRDVLKGLE WRYEGDDDEE AVAFEDSDGD  300
WVDEFMGTRT KRSLWWKLDF DQAPDSDGEN AGVYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22708A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319279.11e-148uncharacterized protein LOC110436487
TrEMBLA0A3L6PUC91e-149A0A3L6PUC9_PANMI; Uncharacterized protein
STRINGPavir.J22986.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-40C2H2 family protein