PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_22509A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 36218.3 Da PI: 4.819 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.8e-51 | 25 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t sg+Wk Oropetium_20150105_22509A 25 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKEFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGSGFWK 107 69***************************.89***************445555789**************************** PP NAM 85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg d++++s+ g +glkk+Lvfy+g+a kg+kt+W+mhe+rl Oropetium_20150105_22509A 108 ATGIDRPIYSAaagrAGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 155 **********988777778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-54 | 24 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.354 | 24 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 26 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
CDHVDQAEEE VVLLGDEEEG EDLVLPGFRF HPTDEELVTF YLRRKVAGKR LSIEIIKEFD 60 IYKHDPWDLP KASTISMDKE WYFFCLRGRK YRNSIRPNRV TGSGFWKATG IDRPIYSAAA 120 GRAGDSIGLK KSLVFYRGSA GKGTKTEWMM HEFRLPPRPE SPGSSPSSQE AEVWTICRIF 180 RRNMTYKKQQ PTAGAGNVVA AAAAAAQPDS CSNTGSLESD TGDEYMNGGL PQQAPMNNNV 240 SDDVYNSHCY QFDQGQWNNA AVAQSEAPQH SPEMASALHH GGVYSSPAVP DYDLYYKDGC 300 SWDDIGSMVM ELTDPSVFYD CTLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 26 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 26 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 26 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 26 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 26 | 188 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 26 | 188 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 26 | 188 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_22509A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955426.1 | 1e-166 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-81 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A368PUM3 | 1e-165 | A0A368PUM3_SETIT; Uncharacterized protein | ||||
STRING | Si030477m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-78 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_22509A |